dataChu: scRNA-Seq C1 Fluidigm data from Chu et al
In aet21/SCENT: Single Cell Entropy
dataChu R Documentation
scRNA-Seq C1 Fluidigm data from Chu et al
Description
The data has been normalized for library-size with cell-dependent
scale-factors, but has not been log-transformed.
Usage
data(dataChu)
Format
Contains a subset of the 1018 single cells profiled in Chu et al,
consisting of 374 hESCs and over 100 cells representing multipotent
progenitors of endothelial cells, together with the cell-type
information, and the SR-values.
Details
Upon loading the data object, we find the following:
-
scChu.m: the scRNA-Seq data matrix
-
phenoChu.v: a vector of cell-type labels matching the
columns of scChu.m.
-
srChu.v: the SR-values for the cells matching the columns
of scChu.m.
References
Teschendorff AE, Enver T. Single-cell entropy for accurate estimation of
differentiation potency from a cell’s transcriptome. Nat.Commun.2017
aet21/SCENT documentation built on Aug. 1, 2022, 12:05 p.m.
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| dataChu | R Documentation |
scRNA-Seq C1 Fluidigm data from Chu et al
Description
The data has been normalized for library-size with cell-dependent scale-factors, but has not been log-transformed.
Usage
data(dataChu)
Format
Contains a subset of the 1018 single cells profiled in Chu et al, consisting of 374 hESCs and over 100 cells representing multipotent progenitors of endothelial cells, together with the cell-type information, and the SR-values.
Details
Upon loading the data object, we find the following:
-
scChu.m: the scRNA-Seq data matrix -
phenoChu.v: a vector of cell-type labels matching the columns ofscChu.m. -
srChu.v: the SR-values for the cells matching the columns ofscChu.m.
References
Teschendorff AE, Enver T. Single-cell entropy for accurate estimation of differentiation potency from a cell’s transcriptome. Nat.Commun.2017
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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