findBandsFIA: Detect band in a FIA acquisition
In adelabriere/proFIA: Preprocessing of FIA-HRMS data

Description Usage Arguments Value Examples

Detect bands of points with similar mass in conscutive scans. Points may be moved if a better candidates is found.

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findBandsFIA(xraw, firstScan = 1, lastScan = length(xraw@scantime),
  ppm = 2, sizeMin = NULL, dmz = 5e-04, beginning = NULL, end = NULL,
  nIso = 3, fracMin = 0.6)

`xraw`	An xcmsRaw object as returned by `xcmsRaw`.
`firstScan`	The first scan to be considered, 1 for general use.
`lastScan`	The last scan to be considered.
`ppm`	The mass deviation in ppm for point in consecutives scans.
`sizeMin`	The minimum size of a band.
`dmz`	The minimum mass tolerance,useful for small masses
`beginning`	The scan of the injection. May be determined using `determiningInjectionZone`.
`end`	The end of injection, may be estimated using `determiningInjectionZone`.
`nIso`	The minimum number of consecutive points for a signal to be detected.
`fracMin`	The minimum fraction of points necessary in beginning:end for a signal to be detected. contaminated by solvent.

A vector contaning the inject peak

#Getting the path of a file.
if(require(plasFIA)){
  path_raw<-list.files(system.file(package="plasFIA","mzML"),full.names=TRUE)[2]

  #Opening the file with xcms
  xraw<-xcmsRaw(path_raw)

  #Getting the injection scan
  gp<-determiningInjectionZone(xraw)

  #performing band detection.
  tbands<-findBandsFIA(xraw,ppm = 2,sizeMin = gp[3]-gp[1],beginning=gp[1],end=gp[2])
  head(tbands)
}