tests/testthat/test-loadData.R

In acidgenomics/brio: Pipette Biological Data In and Out of R

dir <- cacheDir

test_that("R data", {
    envir <- new.env()
    x <- loadData(gr, dir = dir, envir = envir)
    expect_identical(
        object = x,
        expected = c("gr" = realpath(file.path(dir, "gr.rda")))
    )
    expect_true(exists("gr", envir = envir, inherits = FALSE))
})

test_that("R data serialized", {
    envir <- new.env()
    x <- loadData(serialized, dir = dir, envir = envir)
    expect_identical(
        object = x,
        expected = c(
            "serialized" = realpath(file.path(dir, "serialized.rds"))
        )
    )
})

test_that("Error on mixed extensions (no RDS/RDA soup).", {
    expect_error(
        object = loadData(gr, serialized, dir = dir),
        regexp = "mix"
    )
})

test_that("Standard evaluation", {
    expect_error(
        object = loadData("gr.rda", dir = dir),
        regexp = "NSE"
    )
})

test_that("List mode", {
    object <- loadData(list = "serialized", dir = cacheDir)
    expect_identical(basename(object), "serialized.rds")
})

## Avoid accidental reassignment in the current environment.
test_that("Overwrite mode", {
    envir <- new.env()
    envir[["gr"]] <- TRUE
    envir[["serialized"]] <- TRUE
    ## RDS
    expect_error(
        object = loadData(
            serialized,
            dir = dir,
            envir = envir,
            overwrite = FALSE
        ),
        regexp = "overwrite"
    )
    expect_type(
        object = loadData(
            serialized,
            dir = dir,
            envir = envir,
            overwrite = TRUE
        ),
        type = "character"
    )
    ## RDA
    expect_error(
        object = loadData(gr, dir = dir, envir = envir, overwrite = FALSE),
        regexp = "overwrite"
    )
    expect_type(
        object = loadData(gr, dir = dir, envir = envir, overwrite = TRUE),
        type = "character"
    )
})

test_that("Multiple objects in single file", {
    expect_error(
        object = loadData(multi, dir = dir),
        regexp = "multiple"
    )
})

test_that("Renamed file", {
    expect_error(
        object = loadData(renamed, dir = dir),
        regexp = "renamed"
    )
})

test_that("Duplicate RDA and RDS files", {
    expect_error(
        object = loadData(example, dir = dir),
        regexp = "unique"
    )
})

test_that("Invalid arguments", {
    expect_error(
        object = loadData(gr, dir = "XXX")
    )
    expect_error(
        object = loadData(gr, dir = dir, envir = "XXX"),
        regexp = "is.environment"
    )
})