getGeneRanges: getGeneRanges

In ZhangRenL/quickHapR: R Packages for Gene Haplotype Analysis

getGeneRanges

Description

getGeneRanges

Usage

getGeneRanges(gff= gff,
             geneID = geneID,
             type = type,
             gffTermContaingeneID = "Parent")

Arguments

gff	imported gff
geneID	target geneID
type	vector consist with one or more types in gff
gffTermContaingeneID	which term contains the geneID in your gff, defalt is Parent

Examples

data("quickHap_test")
geneRanges <- getGeneRanges(gff = gff,
                            geneID = "test1G0387",
                            type = "CDS",
                            gffTermContaingeneID = "Parent")

ZhangRenL/quickHapR documentation built on June 17, 2022, 12:04 a.m.