groupGO: Functional Profile of a gene set at specific GO level. Given...

In YuLab-SMU/clusterProfiler: A universal enrichment tool for interpreting omics data

Functional Profile of a gene set at specific GO level. Given a vector of genes, this function will return the GO profile at a specific level.

Description

Functional Profile of a gene set at specific GO level. Given a vector of genes, this function will return the GO profile at a specific level.

Usage

groupGO(
  gene,
  OrgDb,
  keyType = "ENTREZID",
  ont = "CC",
  level = 2,
  readable = FALSE
)

Arguments

gene	a vector of entrez gene id.
OrgDb	OrgDb
keyType	key type of input gene
ont	One of "MF", "BP", and "CC" subontologies.
level	Specific GO Level.
readable	if readable is TRUE, the gene IDs will mapping to gene symbols.

Value

A groupGOResult instance.

Author(s)

Guangchuang Yu https://yulab-smu.top

See Also

groupGOResult-class, compareCluster

Examples

	data(gcSample)
	yy <- groupGO(gcSample[[1]], 'org.Hs.eg.db', ont="BP", level=2)
	head(summary(yy))
	#plot(yy)

YuLab-SMU/clusterProfiler documentation built on Nov. 3, 2024, 9:38 p.m.