Files in YuLab-SMU/clusterProfiler
A universal enrichment tool for interpreting omics data
.Rbuildignore
.github/issue_template.md
.gitignore
.travis.yml
CONTRIBUTING.md
DESCRIPTION
Makefile
NAMESPACE
NEWS
NEWS.md
R/00-AllClasses.R
R/AllGenerics.R
R/DOSE.R
R/GFFparser.R
R/accessor.R
R/bitr.R
R/clusterProfiler-package.R
R/compareCluster.R
R/data.R
R/dplyr-arrange.R
R/dplyr-filter.R
R/dplyr-group_by.R
R/dplyr-mutate.R
R/dplyr-rename.R
R/dplyr-select.R
R/dplyr-slice.R
R/dplyr-summarise.R
R/enrichDAVID.R
R/enrichGO.R
R/enrichKEGG.R
R/enrichMKEGG.R
R/enricher.R
R/enrichplot.R
R/go-utilities.R
R/gofilter.R
R/groupGO.R
R/gseAnalyzer.R
R/gson.R
R/kegg-utilities.R
R/pathwayCommons.R
R/plotGOgraph.R
R/ppi.R
R/reexports.R
R/simplify.R
R/taxa.R
R/uniprot.R
R/utilities.R
R/wikiPathways.R
R/zzz.R
README.Rmd
README.md
appveyor.yml
data/DE_GSE8057.rda
data/gcSample.rda
data/kegg_category.rda
data/kegg_species.rda
docs/index.html
graphic-abstract-The-Innovation-2021.jpg
inst/CITATION
inst/extdata/build_kegg_species.R
inst/extdata/c5.cc.v5.0.entrez.gmt
inst/extdata/kegg-mapper-blast.txt
inst/extdata/kegg_pathway_category.r
inst/extdata/kegg_taxa.rds
inst/extdata/wikipathways-20180810-gmt-Homo_sapiens.gmt
man/DataSet.Rd
man/GSEA.Rd
man/Gff2GeneTable.Rd
man/append_kegg_category.Rd
man/bitr.Rd
man/bitr_kegg.Rd
man/browseKEGG.Rd
man/clusterProfiler-package.Rd
man/compareCluster.Rd
man/download_KEGG.Rd
man/dropGO.Rd
man/enrichDAVID.Rd
man/enrichGO.Rd
man/enrichKEGG.Rd
man/enrichMKEGG.Rd
man/enrichPC.Rd
man/enrichWP.Rd
man/enricher.Rd
man/getPPI.Rd
man/getTaxID.Rd
man/getTaxInfo.Rd
man/get_wp_organisms.Rd
man/go2ont.Rd
man/go2term.Rd
man/gofilter.Rd
man/groupGO.Rd
man/groupGOResult-class.Rd
man/gseGO.Rd
man/gseKEGG.Rd
man/gseMKEGG.Rd
man/gsePC.Rd
man/gseWP.Rd
man/gson_GO.Rd
man/gson_KEGG.Rd
man/gson_KEGG_mapper.Rd
man/gson_WP.Rd
man/idType.Rd
man/ko2name.Rd
man/merge_result.Rd
man/plotGOgraph.Rd
man/read.gmt.pc.Rd
man/reexports.Rd
man/search_kegg_organism.Rd
man/simplify-methods.Rd
man/uniprot_get.Rd
outdated/D39/EG2ALLGO.rda
outdated/D39/EG2GO.rda
outdated/D39/GO2ALLEG.rda
outdated/D39/GO2EG.rda
outdated/D39/geneTable.rda
outdated/D39/proteinTable.rda
outdated/M5005/EG2ALLGO.rda
outdated/M5005/EG2GO.rda
outdated/M5005/GO2ALLEG.rda
outdated/M5005/GO2EG.rda
outdated/M5005/geneTable.rda
outdated/NC_007297.gff
outdated/clusterProfiler.Rnw
outdated/clusterProfiler_for_unsupported_organisms.pdf
outdated/for_unsupported.html
outdated/for_unsupported.md
outdated/for_unsupported.rmd
outdated/rmd2pdf.R
tests/testthat.R
tests/testthat/test-bitr.R
tests/testthat/test-compareCluster.R
vignettes/clusterProfiler.Rmd
