read_qza: read the qza file, output of qiime2.

In YuLab-SMU/MicrobiotaProcess: A comprehensive R package for managing and analyzing microbiome and other ecological data within the tidy framework

read the qza file, output of qiime2.

Description

the function was designed to read the ouput of qiime2.

Usage

read_qza(qzafile, parallel = FALSE)

Arguments

qzafile	character, the format of file should be one of 'BIOMV210DirFmt', 'TSVTaxonomyDirectoryFormat', 'NewickDirectoryFormat' and 'DNASequencesDirectoryFormat'.
parallel	logical, whether parsing the taxonomy by multi-parallel, efault is FALSE.

Value

list contained one or multiple object of feature table, taxonomy table, tree and represent sequences.

Examples

## Not run: 
otuqzafile <- system.file("extdata", "table.qza",
                          package="MicrobiotaProcess")
otuqza <- read_qza(otuqzafile)
str(otuqza)

## End(Not run)

YuLab-SMU/MicrobiotaProcess documentation built on July 26, 2024, 4:21 a.m.