as.treedata: as.treedata

In YuLab-SMU/MicrobiotaProcess: A comprehensive R package for managing and analyzing microbiome and other ecological data within the tidy framework

as.treedata

Description

convert taxonomyTable to treedata

Usage

## S3 method for class 'taxonomyTable'
as.treedata(tree, include.rownames = FALSE, ...)

Arguments

tree	object, This is for taxonomyTable class, so it should be a taxonomyTable.
include.rownames	logical, whether to set the rownames of taxonomyTable to tip labels, default is FALSE.
...	additional parameters.

Examples

## Not run: 
  data(test_otu_data)
  test_otu_data %<>% as.phyloseq()
  tree <- as.treedata(phyloseq::tax_table(test_otu_data), include.rownames = TRUE)

## End(Not run)

YuLab-SMU/MicrobiotaProcess documentation built on July 26, 2024, 4:21 a.m.