mp_import_humann_regroup: Import function to load the output of human_regroup_table in...

In YuLab-SMU/MicrobiotaProcess: A comprehensive R package for managing and analyzing microbiome and other ecological data within the tidy framework

Import function to load the output of human_regroup_table in HUMAnN.

Description

Import function to load the output of human_regroup_table in HUMAnN.

Usage

mp_import_humann_regroup(
  profile,
  mapfilename = NULL,
  rm.unknown = TRUE,
  keep.contribute.abundance = FALSE,
  ...
)

Arguments

profile	the output file (text format) of human_regroup_table in HUMAnN.
mapfilename	the sample information file or data.frame,
rm.unknown	logical whether remove the unmapped and ungrouped features.
keep.contribute.abundance	logical whether keep the abundance of contributed taxa, default is FALSE, it will consume more memory if it set to TRUE.
...	additional parameters, meaningless now.

Author(s)

Shuangbin Xu

YuLab-SMU/MicrobiotaProcess documentation built on July 26, 2024, 4:21 a.m.