mp_import_biom: building MPSE object from biom-format file.

In YuLab-SMU/MicrobiotaProcess: A comprehensive R package for managing and analyzing microbiome and other ecological data within the tidy framework

building MPSE object from biom-format file.

Description

building MPSE object from biom-format file.

Usage

mp_import_biom(
  biomfilename,
  mapfilename = NULL,
  otutree = NULL,
  refseq = NULL,
  ...
)

Arguments

biomfilename	character the biom-format file path.
mapfilename	character, the file contained sample information, the tsv format, default is NULL.
otutree	treedata, phylo or character, the file contained reference sequences, or treedata object, which is the result parsed by functions of treeio, default is NULL.
refseq	XStringSet or character, the file contained the representation sequence file or XStringSet class to store the representation sequence, default is NULL.
...	additional parameter, which is meaningless now.

Value

MPSE-class

YuLab-SMU/MicrobiotaProcess documentation built on July 26, 2024, 4:21 a.m.