viewResults: View results of analysis

In YosefLab/VISION: Functional interpretation of single cell RNA-seq latent manifolds

View results of analysis

Description

launch a local server to explore the results with a browser.

Usage

## S4 method for signature 'Vision'
viewResults(object, port = NULL, host = NULL, browser = TRUE, name = NULL)

## S4 method for signature 'character'
viewResults(object, port = NULL, host = NULL, browser = TRUE, name = NULL)

Arguments

object	VISION object or path to an RDS file containing such an object (saved using saveAndViewResults, or directly using saveRDS)
port	The port on which to serve the output viewer. If omitted, a random port between 8000 and 9999 is chosen.
host	The host used to serve the output viewer. If omitted, "127.0.0.1" is used.
browser	Whether or not to launch the browser automatically (default=TRUE)
name	Name for the sample - is shown at the top of the output report

Value

None

Examples

## Not run: 

vis <- Vision(data = expMat, signatures = sigs)

options(mc.cores=10) # Use 10 cores
vis <- analyze(vis)

saveRDS(vis, 'vision_results.rds') # (Optional) Save results

vis <- viewResults(vis) # Launches dynamic output report

## End(Not run)

YosefLab/VISION documentation built on June 14, 2024, 5:27 p.m.