getProjections: Get 2D views of the expression data

In YosefLab/VISION: Functional interpretation of single cell RNA-seq latent manifolds

Get 2D views of the expression data

Description

This method provides access to the 2d projections that are used to display results in the output report

Usage

## S4 method for signature 'Vision'
getProjections(object)

Arguments

object

VISION object

Value

List of matrix (Cells x 2)

Examples

## Not run: 

# After running 'analyze'
# Retrieve tSNE30 (tSNE with perplexity 30) and plot it

tsne <- getProjections(vis)[["tSNE30"]]

plot(tsne[, 1], tsne[, 2])

# To see the names of available projections, just run:

names(getProjections(vis))


## End(Not run)

YosefLab/VISION documentation built on June 14, 2024, 5:27 p.m.