getMetaDifferential: Get Results of One-vs-All Differential Tests with Metadata...
In YosefLab/VISION: Functional interpretation of single cell RNA-seq latent manifolds
getMetaDifferential,Vision-method R Documentation
Get Results of One-vs-All Differential Tests with Metadata Variables
Description
Returns the results of running one-vs-all differential
tests for each level of every factor meta-variable.
Usage
## S4 method for signature 'Vision'
getMetaDifferential(object)
Arguments
object
VISION object
Details
For numeric meta-variables, the 'stat' is the AUC. For factor meta-variables
the stat is the chisq statistic comparing the two groups
The output object has a nested structure:
List of meta-data variables -> List of variable levels -> Results Dataframe
The results dataframe has three columns: "stat", "pValue", "FDR"
Value
nested list of list of data.frame (see details)
YosefLab/VISION documentation built on June 14, 2024, 5:27 p.m.
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| getMetaDifferential,Vision-method | R Documentation |
Get Results of One-vs-All Differential Tests with Metadata Variables
Description
Returns the results of running one-vs-all differential tests for each level of every factor meta-variable.
Usage
## S4 method for signature 'Vision'
getMetaDifferential(object)
Arguments
object |
VISION object |
Details
For numeric meta-variables, the 'stat' is the AUC. For factor meta-variables the stat is the chisq statistic comparing the two groups
The output object has a nested structure:
List of meta-data variables -> List of variable levels -> Results Dataframe
The results dataframe has three columns: "stat", "pValue", "FDR"
Value
nested list of list of data.frame (see details)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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