writeReport: Print LineagePulse report

In YosefLab/LineagePulse: Differential expression analysis and model fitting for single-cell RNA-seq data

Description

Print LineagePulse report string to .txt file or stdout.

Usage

writeReport(object, file = "")

Arguments

object	(LineagePulseObject) Output object of LineagePulse.
file	(file) [DEFAULT ""] File to print report to. Default is stdout.

Value

nothing to return

Author(s)

David Sebastian Fischer

Examples

   
lsSimulatedData <- simulateContinuousDataSet(
    scaNCells = 10,
    scaNConst = 2,
    scaNLin = 2,
    scaNImp = 2,
    scaMumax = 100,
    scaSDMuAmplitude = 3,
    vecNormConstExternal=NULL,
    vecDispExternal=rep(20, 6),
    vecGeneWiseDropoutRates = rep(0.1, 6))
objLP <- runLineagePulse(
    counts = lsSimulatedData$counts,
    dfAnnotation = lsSimulatedData$annot,
    strMuModel = "impulse")
writeReport(objLP, file="")
  

YosefLab/LineagePulse documentation built on May 6, 2019, 2:19 p.m.