topTables: Top Tables of Differential Expression Results
In WeiSong-bio/roryk-bcbioRNASeq: RNA-Seq Utilities

Description Usage Arguments Value Author(s) See Also Examples

Top Tables of Differential Expression Results

topTables(object, ...)

## S4 method for signature 'DESeqResults'
topTables(object, n = 50L, coding = FALSE)

## S4 method for signature 'list'
topTables(object, n = 50L, coding = FALSE)

`object`	`resultsTables()` return `list`.
`...`	Additional arguments.
`n`	Number genes to report.
`coding`	Whether to only return coding genes.

kable.

Michael Steinbaugh

Other R Markdown Functions: prepareRNASeqTemplate

# DESeqResults ====
# Minimal return
topTables(res_small, n = 5L)

# resultsTables list ====
# Return with gene annotations and DESeq2 normalized counts
x <- resultsTables(
    results = res_small,
    counts = dds_small
)
topTables(x, n = 5L)