cigar2length: CIGAR-to-length
In VladaMilch/pdProbeRemap: What the package does (short line)
Description
Usage
Arguments
Details
Value
Author(s)
Examples
View source: R/6_1_cigar2length.R
Description
Converts CIGAR string of the mappint to length of the mapping
Usage
1
cigar2length(cigar_string)
Arguments
cigar_string
character, CIGAR string from the alignment data.frame
Details
Converts CIGAR string to length of the mapping fragment; copied from Java script to some alignment processing tool..
Value
returns integer.
Author(s)
Vladislava Milchevskaya milchv@gmail.com
Examples
1
2
3
cigar_character = "20M1S2N5M"
mapping_length = cigar2length(cigar_character)
mapping_length
VladaMilch/pdProbeRemap documentation built on May 28, 2019, 3:21 p.m.
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Description Usage Arguments Details Value Author(s) Examples
View source: R/6_1_cigar2length.R
Description
Converts CIGAR string of the mappint to length of the mapping
Usage
1 | cigar2length(cigar_string)
|
Arguments
cigar_string |
character, CIGAR string from the alignment |
Details
Converts CIGAR string to length of the mapping fragment; copied from Java script to some alignment processing tool..
Value
returns integer.
Author(s)
Vladislava Milchevskaya milchv@gmail.com
Examples
1 2 3 | cigar_character = "20M1S2N5M"
mapping_length = cigar2length(cigar_character)
mapping_length
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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