maxq_lf_evidence: Example MaxQuant evidence file from the output of a label...
In Vitek-Lab/MSstatsPTM: Statistical Characterization of Post-translational Modifications
maxq_lf_evidence R Documentation
Example MaxQuant evidence file from the output of a label free experiment
Description
Experiment was performed by the Olsen lab and published on Nat. Commun.
(citation below).
Usage
maxq_lf_evidence
Format
a data.table with 63 columns and 511 rows, the output of MaxQuant
Details
Bekker-Jensen, D.B., Bernhardt, O.M., Hogrebe, A. et al. Rapid and
site-specific deep phosphoproteome profiling by data-independent acquisition
without the need for spectral libraries. Nat Commun 11, 787 (2020).
https://doi.org/10.1038/s41467-020-14609-1
The experiment was processed using MaxQuant by the computational proteomics
team at Pfizer (Liang Xue and Pierre Jean).
The experiment did not contain a global profiling run, but we show an example
of extracting the unmodified peptides and using them in place of the
profiling run.
Examples
head(maxq_lf_evidence)
Vitek-Lab/MSstatsPTM documentation built on Sept. 26, 2024, 9:28 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| maxq_lf_evidence | R Documentation |
Example MaxQuant evidence file from the output of a label free experiment
Description
Experiment was performed by the Olsen lab and published on Nat. Commun. (citation below).
Usage
maxq_lf_evidence
Format
a data.table with 63 columns and 511 rows, the output of MaxQuant
Details
Bekker-Jensen, D.B., Bernhardt, O.M., Hogrebe, A. et al. Rapid and site-specific deep phosphoproteome profiling by data-independent acquisition without the need for spectral libraries. Nat Commun 11, 787 (2020). https://doi.org/10.1038/s41467-020-14609-1
The experiment was processed using MaxQuant by the computational proteomics team at Pfizer (Liang Xue and Pierre Jean).
The experiment did not contain a global profiling run, but we show an example of extracting the unmodified peptides and using them in place of the profiling run.
Examples
head(maxq_lf_evidence)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.