Files in Vitek-Lab/MSstatsLiP

LiP Significance Analysis in shotgun mass spectrometry-based proteomic experiments

R/DIANNtoMSstatsLiPFormat.R R/MSstatsLiP.R R/PCAPlotLiP.R R/RcppExports.R R/ResistanceBarcodePlotLiP.R R/SkylinetoMSstatsLiPFormat.R R/SpectronauttoMSstatsLiPFormat.R R/StructuralBarcodePlotLiP.R R/calculateProteolyticResistance.R R/calculateTrypticity.R R/correlationPlotLiP.R R/dataDoc.R R/dataProcessPlotsLiP.R R/dataSummarizationLiP.R R/groupComparisonLiP.R R/groupComparisonPlotsLiP.R R/locatePTM.R R/msstatslip-package.R R/trypticHistogramLiP.R R/utils_checks.R README.md inst/tinytest/test_SkylinetoMSstatsLiPFormat.R inst/tinytest/test_SpectronauttoMSstatsLiPFormat.R inst/tinytest/test_dataProcessPlotsLiP.R inst/tinytest/test_dataSummarizationLiP.R inst/tinytest/test_groupComparisonLiP.R inst/tinytest/test_groupComparisonPlotsLiP.R inst/tinytest/test_trypticHistogramLiP.R man/DIANNtoMSstatsLiPFormat.Rd man/LiPRawData.Rd man/MSstatsLiP.Rd man/MSstatsLiP_Summarized.Rd man/MSstatsLiP_data.Rd man/MSstatsLiP_model.Rd man/PCAPlotLiP.Rd man/ResistanceBarcodePlotLiP.Rd man/SkylineTest.Rd man/SkylinetoMSstatsLiPFormat.Rd man/SpectronauttoMSstatsLiPFormat.Rd man/StructuralBarcodePlotLiP.Rd man/TrPRawData.Rd man/annotSite.Rd man/calculateProteolyticResistance.Rd man/calculateTrypticity.Rd man/correlationPlotLiP.Rd man/dataProcessPlotsLiP.Rd man/dataSummarizationLiP.Rd man/groupComparisonLiP.Rd man/groupComparisonPlotsLiP.Rd man/locateMod.Rd man/locatePTM.Rd man/raw_lip.Rd man/raw_prot.Rd man/tidyFasta.Rd man/trypticHistogramLiP.Rd tests/tinytest.R vignettes/MSstatsLiP_Workflow.Rmd vignettes/Proteolytic_resistance_notebook.Rmd