dot-makeProfilePlot: Create profile plot

In Vitek-Lab/MSstats: Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experiments

Create profile plot

Description

Create profile plot

Usage

.makeProfilePlot(
  input,
  is_censored,
  featureName,
  y.limdown,
  y.limup,
  x.axis.size,
  y.axis.size,
  text.size,
  text.angle,
  legend.size,
  dot.size.profile,
  ss,
  s,
  cumGroupAxis,
  yaxis.name,
  lineNameAxis,
  groupNametemp,
  dot_colors
)

Arguments

input	data.table
is_censored	TRUE if censored values were imputed
featureName	for "ProfilePlot" only, "Transition" (default) means printing feature legend in transition-level; "Peptide" means printing feature legend in peptide-level; "NA" means no feature legend printing.
x.axis.size	size of x-axis labeling for "Run" in Profile Plot and QC Plot, and "Condition" in Condition Plot. Default is 10.
y.axis.size	size of y-axis labels. Default is 10.
text.size	size of labels represented each condition at the top of graph in Profile Plot and QC plot. Default is 4.
text.angle	angle of labels represented each condition at the top of graph in Profile Plot and QC plot or x-axis labeling in Condition plot. Default is 0.
legend.size	size of feature legend (transition-level or peptide-level) above graph in Profile Plot. Default is 7.
dot.size.profile	size of dots in profile plot. Default is 2.

Vitek-Lab/MSstats documentation built on Nov. 4, 2024, 3:08 p.m.