dot-fitModelSingleProtein: Fit model and perform group comparison for a single protein

In Vitek-Lab/MSstats: Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experiments

Fit model and perform group comparison for a single protein

Description

Fit model and perform group comparison for a single protein

Usage

.fitModelSingleProtein(
  input,
  contrast_matrix,
  has_tech_replicates,
  is_single_subject,
  repeated,
  groups,
  samples_info,
  save_fitted_models,
  has_imputed
)

Arguments

input	data.table of summarized data
contrast_matrix	contrast matrix
has_tech_replicates	if TRUE, there are technical replicates
is_single_subject	if TRUE, experiment consists of a single subject
repeated	if TRUE, experiment consists of repeated measurements
groups	unique labels for experimental conditions
samples_info	number of runs per group
save_fitted_models	if TRUE, fitted model will be saved. If FALSE, it will be replaced by NULL
has_imputed	if TRUE, missing values have been imputed by dataProcess

Vitek-Lab/MSstats documentation built on Nov. 4, 2024, 3:08 p.m.