RNAseqcombine: Combining the RNAseq reads of family members in a single...

In VilainLab/Nanotator: Next generation structural variant annotation and classification

Combining the RNAseq reads of family members in a single file.

Description

Combining the RNAseq reads of family members in a single file.

Usage

RNAseqcombine(
  RNASeqDir,
  returnMethod = c("Text", "dataFrame"),
  outpath = "",
  outFileName = ""
)

Arguments

RNASeqDir	character. Directory containing RNAseq reads.
returnMethod	character. Method of returning Data.
outpath	character. Contains file path if Method of return is chosen as Text.
outFileName	character. Output file name.

Value

Text or Dataframe containing TPM read counts of genes in the family.

Examples

## Not run: 
RNASeqDir = system.file("extdata", package="nanotatoR")
returnMethod="dataFrame"
datRNASeq <- RNAseqcombine(RNASeqDir = RNASeqDir,
returnMethod = returnMethod)

## End(Not run)

VilainLab/Nanotator documentation built on Aug. 2, 2024, 8:45 p.m.