CreateEditingTable: Convert RNA editing matrix into a special data frame with...
In TransBioInfoLab/rnaEditr: Statistical analysis of RNA editing sites and hyper-editing regions
View source: R/CreateEditingTable.R
CreateEditingTable R Documentation
Convert RNA editing matrix into a special data frame with class
rnaEdit_df.
Description
Convert RNA editing matrix to a special data frame with class
rnaEdit_df, which is then used to identify differentially co-edited
regions with function TestAssociations.
Usage
CreateEditingTable(rnaEditMatrix)
Arguments
rnaEditMatrix
A matrix of RNA editing level values on individual
sites, with row names as site IDs in the form of "chrAA:XXXXXXXX", and
column names as sample IDs. Please make sure to
follow the format of example dataset (data(rnaedit_df)).
Value
A dataset of class rnaEdit_df, includes variables
seqnames, start, end, width and summarized RNA editing levels in
each sample.
See Also
TransformToGR, AllCloseByRegions,
AllCoeditedRegions, SummarizeAllRegions,
TestAssociations, AnnotateResults
Examples
data(rnaedit_df)
CreateEditingTable(rnaEditMatrix = rnaedit_df)[1:3, 1:5]
TransBioInfoLab/rnaEditr documentation built on Nov. 29, 2022, 3:31 p.m.
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View source: R/CreateEditingTable.R
| CreateEditingTable | R Documentation |
Convert RNA editing matrix into a special data frame with class
rnaEdit_df.
Description
Convert RNA editing matrix to a special data frame with class
rnaEdit_df, which is then used to identify differentially co-edited
regions with function TestAssociations.
Usage
CreateEditingTable(rnaEditMatrix)
Arguments
rnaEditMatrix |
A matrix of RNA editing level values on individual
sites, with row names as site IDs in the form of "chrAA:XXXXXXXX", and
column names as sample IDs. Please make sure to
follow the format of example dataset ( |
Value
A dataset of class rnaEdit_df, includes variables
seqnames, start, end, width and summarized RNA editing levels in
each sample.
See Also
TransformToGR, AllCloseByRegions,
AllCoeditedRegions, SummarizeAllRegions,
TestAssociations, AnnotateResults
Examples
data(rnaedit_df) CreateEditingTable(rnaEditMatrix = rnaedit_df)[1:3, 1:5]
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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