inst/README.md

In TransBioInfoLab/rnaEditr: Statistical analysis of RNA editing sites and hyper-editing regions

rnaEditr Supplemental Data Scripts

This is a mapping between each of the data sets included in the package and the scripts used to create / download them.

data = inst/extdata/BRCA_AG_annovar_nomutation.txt file = https://www.ncbi.nlm.nih.gov/pubmed/26439496 (doi: 10.1016/j.ccell.2015.08.013) note this data is moved out of the folder due to large data size

data = inst/extdata/TCGA-BRCA.GDC_phenotype.tsv file = https://www.ncbi.nlm.nih.gov/pubmed/26439496 (doi: 10.1016/j.ccell.2015.08.013) note this data is moved out of the folder due to large data size

data = inst/extdata/hg19_annoGene_gr.RDS file = inst/scripts/1-CreateAnnoGeneGR.R

data = inst/extdata/hg38_annoGene_gr.RDS file = inst/scripts/1-CreateAnnoGeneGR.R

data = inst/extdata/rnaEdit_ge5_df.RDS file = inst/scripts/2-CreateRnaEditAndPhenoDFs.R note this data is moved out of the folder due to large data size

data = inst/extdata/pheno_df.RDS file = inst/scripts/2-CreateRnaEditAndPhenoDFs.R

data = data/t_rnaedit_df.RDA file = inst/scripts/3-Create_ex_data.R

data = data/rnaedit_df.RDA file = inst/scripts/3-Create_ex_data.R

TransBioInfoLab/rnaEditr documentation built on Nov. 29, 2022, 3:31 p.m.