checkInputs: Check inputs for FindCelltypes function
In Theob0t/scEasyPip: Automated Seurat Pipeline for scRNA-seq analysis
Description
Usage
Arguments
Value
Description
Check inputs for FindCelltypes function
Usage
1
checkInputs(markers.file, consensus.file, object, filename)
Arguments
markers.file
Path to the markers file (FindAllMarkers() output)
consensus.file
Path to the consensus file
object
A Seurat object
filename
Character string to name the saved umap plots
Value
Return markers and consensus files as dataframes
Theob0t/scEasyPip documentation built on Dec. 18, 2021, 4:10 p.m.
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Description Usage Arguments Value
Description
Check inputs for FindCelltypes function
Usage
1 | checkInputs(markers.file, consensus.file, object, filename)
|
Arguments
markers.file |
Path to the markers file (FindAllMarkers() output) |
consensus.file |
Path to the consensus file |
object |
A Seurat object |
filename |
Character string to name the saved umap plots |
Value
Return markers and consensus files as dataframes
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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