gene_pathway_matrix: Homo sapiens GO ontology and REACTOME ontology gene-pathway...
In TaoDFang/gerr: Gene-set Enrichment with Regularized Regression
Description
Usage
Format
Source
Description
A rds R object contains GO ontology and REACTOME ontology gene-pathway realtionship
Usage
1
Format
Formal class 'dgCMatrix' [package "Matrix"]
Source
http://geneontology.org/docs/download-ontology/, https://reactome.org/download-data
A binary matrix whose columns are the pathways/gene sets from GO ontology and REATOME database and
whose rows are all the genes(represented by gene HUGO gene symbols) from GO ontology and REATOME database.
For gene i and pathway j, the value of matrix(i,j) is 1 is gene i belonging to pathway j otherwise 0
TaoDFang/gerr documentation built on July 30, 2019, 6:54 p.m.
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Description Usage Format Source
Description
A rds R object contains GO ontology and REACTOME ontology gene-pathway realtionship
Usage
1 |
Format
Formal class 'dgCMatrix' [package "Matrix"]
Source
http://geneontology.org/docs/download-ontology/, https://reactome.org/download-data A binary matrix whose columns are the pathways/gene sets from GO ontology and REATOME database and whose rows are all the genes(represented by gene HUGO gene symbols) from GO ontology and REATOME database. For gene i and pathway j, the value of matrix(i,j) is 1 is gene i belonging to pathway j otherwise 0
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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