find_root_ids: find_root_ids

In TaoDFang/GENEMABR: Gene-set Enrichment with Regularized Regression

Description

If you use the default pathway databases(GO Ontologyand REACTOME),this function allows you to extract GO sub-roots or REACTOME roots for certain pathways from GO or REACTOME to help you better understanding thier the biological meanings

Usage

find_root_ids(selected_pathways)

Arguments

selected_pathways

A vecor of GO and/or REACTOME pathways IDs.

Value

A list of GO sub-root or REACTOME root ids for provided pathways. If a certain pathway has morn than one GO sub-roots or REACTOME roots, they will be seperated by "#".

Examples

find_root_ids(selected_pathways=c("GO:0005834","R-HSA-111469"))

TaoDFang/GENEMABR documentation built on July 28, 2019, 3:16 p.m.