Man pages for TaoDFang/GENEMABR
Gene-set Enrichment with Regularized Regression
| find_root_ids | find_root_ids |
| fisher_exact_test | fisher_exact_test |
| fisherVerif | fisherVerif |
| from_id2name | from_id2name |
| fullProbSimResDf | fullProbSimResDf |
| gene_pathway_matrix | Homo sapiens GO ontology and REACTOME ontology gene-pathway... |
| get_steps | get_steps |
| human_go_ontology | Homo sapiens GO ontology tree |
| human_go_roots | human_go_roots |
| human_go_sub_roots | human_go_sub_roots |
| human_reactome_ontology | Homo sapiens REACTOME ontology tree |
| human_reactome_roots | human_reactome_roots |
| mydata | Helper function to load file |
| pretrained_gaussian_lambda | Pretrained lambda values for Gaussian glmnet |
| regression_selected_pathways | regression_selected_pathways |
| simGenesets | simGenesets |
| verifKeyRes | verifKeyRes |
