PlotSegment: Plot Segment

In THJlab/seqNdisplayR: A Tool for Customizable and Reproducible Plotting of Sequencing Coverage Data

Plot Segment

Description

Internal function:

Usage

PlotSegment(
  feature,
  plotted_region,
  plotted_strand,
  both_strands,
  plotting_segment,
  basic_plot_parameters,
  neg_vals_neg_strand,
  plot_width_parameters,
  plot_vertical_parameters,
  annot_info,
  panel_info,
  panels_list,
  panel_separators,
  separators_lwds,
  separators_colors,
  incl_first_panel,
  print_one_line_sample_names,
  replicate_names,
  header,
  header_font_sizes,
  scaling_factor,
  full_width_cm,
  genomic_scale_on_top,
  genomic_scale_font_size,
  reverse_strand_direction,
  bin_stats,
  dummy_plot,
  tracks,
  strands_alpha,
  intermingled_color,
  unstranded_beds,
  annotation_packing,
  annotation_panel_font_size,
  incl_feature_names,
  feature_font_size,
  feature_names_above,
  final_feature_text_org,
  incl_feature_brackets,
  incl_feature_shadings,
  feature_shading_colors,
  feature_shading_alpha,
  annot_cols,
  group_autoscale,
  incl_track_scales,
  scientific_scale,
  scale_font_size,
  force_scale_list,
  log2transformed,
  colors,
  alternating_background,
  bgr_colors,
  bgr_alpha,
  font_colors,
  letter_widths,
  letter_heights,
  enhance_signals,
  first_plot,
  verbosity
)

Arguments

feature
plotted_region
plotted_strand
both_strands
plotting_segment
basic_plot_parameters
neg_vals_neg_strand
plot_width_parameters
plot_vertical_parameters
annot_info
panel_info
panels_list
panel_separators
separators_lwds
separators_colors
incl_first_panel
print_one_line_sample_names
replicate_names
header
header_font_sizes
scaling_factor
full_width_cm
genomic_scale_on_top
genomic_scale_font_size
reverse_strand_direction
bin_stats
dummy_plot
tracks
strands_alpha
intermingled_color
unstranded_beds
annotation_packing
annotation_panel_font_size
incl_feature_names
feature_font_size
feature_names_above
final_feature_text_org
incl_feature_brackets
incl_feature_shadings
feature_shading_colors
feature_shading_alpha
annot_cols
group_autoscale
incl_track_scales
scientific_scale
scale_font_size
force_scale_list
log2transformed
colors
alternating_background
bgr_colors
bgr_alpha
font_colors
letter_widths
letter_heights
enhance_signals
first_plot
verbosity

Author(s)

SLA

THJlab/seqNdisplayR documentation built on Aug. 31, 2024, 7:56 p.m.