getPathDescription-methods: Extract description for enriched pathways from query result...

In StanleyXu/egquery: Loci2path: regulatory annotation of genomic intervals based on tissue-specific expression QTLs

Description

This function extracts the pathway description from geneSet object.

Usage

getPathDescription(res, ...)

## S4 method for signature 'loci2pathResult'
getPathDescription(res, geneset)

Arguments

res	query result from function query.egset.list()
...	additional params
geneset	A geneSet object

Value

a vector of gene set description from geneSet description slot

Examples

result <- query(query.gr=query.gr, 
  loci=eset.list, path=biocarta)
path.des <- getPathDescription(result, biocarta)

StanleyXu/egquery documentation built on Sept. 12, 2019, 9:35 a.m.