strongCDS: Find active CDS
In Roleren/uORFomePipe: uORF prediction in R
View source: R/ClassifierHelpers.R
strongCDS R Documentation
Find active CDS
Description
A filter to say if a CDS has strong indication of translation,
used as part of positives training set
Usage
strongCDS(coverage, fpkm, startCodonCoverage, startRegionRelative, ORFScore)
Arguments
coverage
(counts over region)
fpkm
FPKM value of region
startCodonCoverage
(Coverage of startcodon +/- 1 base region)
startRegionRelative
Relative coverage of start region to upstream short region
ORFScore
Periodicity score of triplets, > 0 if frame 0 has most reads.
Value
logical TRUE/FALSE per row
Roleren/uORFomePipe documentation built on Jan. 14, 2024, 5:11 a.m.
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View source: R/ClassifierHelpers.R
| strongCDS | R Documentation |
Find active CDS
Description
A filter to say if a CDS has strong indication of translation, used as part of positives training set
Usage
strongCDS(coverage, fpkm, startCodonCoverage, startRegionRelative, ORFScore)
Arguments
coverage |
(counts over region) |
fpkm |
FPKM value of region |
startCodonCoverage |
(Coverage of startcodon +/- 1 base region) |
startRegionRelative |
Relative coverage of start region to upstream short region |
ORFScore |
Periodicity score of triplets, > 0 if frame 0 has most reads. |
Value
logical TRUE/FALSE per row
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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