getUorfsInDb: get the uorfs in the database
In Roleren/uORFomePipe: uORF prediction in R
View source: R/DataBaseGetters.R
getUorfsInDb R Documentation
get the uorfs in the database
Description
get the uorfs in the database
Usage
getUorfsInDb(withExons = T, withTranscripts = T, uniqueORFs = T, mode = "uORF")
Arguments
withExons
logical, default TRUE, should the uorfs be splitted by exons
withTranscripts
logical, default TRUE, should the uorfs have transcript information,
warning, this will duplicate some uorfs.
uniqueORFs
logical, default TRUE, only unique
mode
character, default "uORF". Also "CDS" for validation runs.
Value
a GRangesList or data.table, if(F, F)
Roleren/uORFomePipe documentation built on Jan. 14, 2024, 5:11 a.m.
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View source: R/DataBaseGetters.R
| getUorfsInDb | R Documentation |
get the uorfs in the database
Description
get the uorfs in the database
Usage
getUorfsInDb(withExons = T, withTranscripts = T, uniqueORFs = T, mode = "uORF")
Arguments
withExons |
logical, default TRUE, should the uorfs be splitted by exons |
withTranscripts |
logical, default TRUE, should the uorfs have transcript information, warning, this will duplicate some uorfs. |
uniqueORFs |
logical, default TRUE, only unique |
mode |
character, default "uORF". Also "CDS" for validation runs. |
Value
a GRangesList or data.table, if(F, F)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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