readTable: Read a table from the database

In Roleren/uORFomePipe: uORF prediction in R

Read a table from the database

Description

Note: Because of SQL naming, any table you defined that has column names starting with X, then a number directly afterwards, will lose the X.

Usage

readTable(
  tableName,
  asGR = FALSE,
  with.IDs = TRUE,
  uorfDB = get("uorfDB", envir = .GlobalEnv)
)

Arguments

tableName	name of table in sql database
asGR	convert to GRanges
with.IDs	include ID column (remove to make calculations easier)
uorfDB	the defined uORFome sql database, default: get("uorfDB", envir = .GlobalEnv)

Value

the table as data.table or GRanges

Roleren/uORFomePipe documentation built on Jan. 14, 2024, 5:11 a.m.