plot_varimax_z_pairs: Create a pairs plot of select Y factors

In RoheLab/vsp: Vintage Sparse PCA for Semi-Parametric Factor Analysis

Create a pairs plot of select Y factors

Description

To avoid overplotting, plots data for a maximum of 1000 nodes. If there are more than 1000 nodes, samples 1000 nodes randomly proportional to row norms (i.e. nodes with embeddings larger in magniture are more likely to be sampled).

Usage

plot_varimax_z_pairs(fa, factors = 1:min(5, fa$rank), ...)

plot_varimax_y_pairs(fa, factors = 1:min(5, fa$rank), ...)

plot_svd_u(fa, factors = 1:min(5, fa$rank))

plot_svd_v(fa, factors = 1:min(5, fa$rank))

Arguments

fa	A vsp_fa() object.
factors	The specific columns to index into. The most reliable option here is to index with an integer vector of column indices, but you could also use a character vector if columns have been named. By default returns all factors/singular vectors.
...	Arguments passed on to GGally::ggpairs data data set using. Can have both numerical and categorical data. mapping aesthetic mapping (besides x and y). See aes(). If mapping is numeric, columns will be set to the mapping value and mapping will be set to NULL. columns which columns are used to make plots. Defaults to all columns. title,xlab,ylab title, x label, and y label for the graph upper see Details lower see Details diag see Details params deprecated. Please see wrap_fn_with_param_arg axisLabels either "show" to display axisLabels, "internal" for labels in the diagonal plots, or "none" for no axis labels columnLabels label names to be displayed. Defaults to names of columns being used. labeller labeller for facets. See labellers. Common values are "label_value" (default) and "label_parsed". switch switch parameter for facet_grid. See ggplot2::facet_grid. By default, the labels are displayed on the top and right of the plot. If "x", the top labels will be displayed to the bottom. If "y", the right-hand side labels will be displayed to the left. Can also be set to "both" showStrips boolean to determine if each plot's strips should be displayed. NULL will default to the top and right side plots only. TRUE or FALSE will turn all strips on or off respectively. legend May be the two objects described below or the default NULL value. The legend position can be moved by using ggplot2's theme element pm + theme(legend.position = "bottom") a numeric vector of length 2 provides the location of the plot to use the legend for the plot matrix's legend. Such as legend = c(3,5) which will use the legend from the plot in the third row and fifth column a single numeric value provides the location of a plot according to the display order. Such as legend = 3 in a plot matrix with 2 rows and 5 columns displayed by column will return the plot in position c(1,2) a object from grab_legend() a predetermined plot legend that will be displayed directly cardinality_threshold maximum number of levels allowed in a character / factor column. Set this value to NULL to not check factor columns. Defaults to 15 progress NULL (default) for a progress bar in interactive sessions with more than 15 plots, TRUE for a progress bar, FALSE for no progress bar, or a function that accepts at least a plot matrix and returns a new progress::progress_bar. See ggmatrix_progress. proportions Value to change how much area is given for each plot. Either NULL (default), numeric value matching respective length, grid::unit object with matching respective length or "auto" for automatic relative proportions based on the number of levels for categorical variables. legends deprecated

Value

A ggplot2::ggplot() plot or GGally::ggpairs() plot.

Functions

• plot_varimax_y_pairs(): Create a pairs plot of select Z factors

• plot_svd_u(): Create a pairs plot of select left singular vectors

• plot_svd_v(): Create a pairs plot of select right singular vectors

Examples

data(enron, package = "igraphdata")

fa <- vsp(enron, rank = 3)

plot_varimax_z_pairs(fa)
plot_varimax_y_pairs(fa)

plot_svd_u(fa)
plot_svd_v(fa)

screeplot(fa)

plot_mixing_matrix(fa)

plot_ipr_pairs(fa)

RoheLab/vsp documentation built on Nov. 6, 2024, 10:08 p.m.