RPPA: RPPA datasets from TCGA project
In RTCGA/RTCGA.rppa: RPPA datasets from The Cancer Genome Atlas Project
Description
Usage
Value
Source
Examples
Description
Package provides RPPA datasets from The Cancer Genome Atlas Project for
all available cohorts types from http://gdac.broadinstitute.org/.
Data were downloaded using RTCGA-package and contain snapshots
for the date: 2015-11-01. The process is described here:
http://rtcga.github.io/RTCGA/.
Use cases, examples and information about datasets in RTCGA.data
family can be found here: browseVignettes("RTCGA"). RPPA data format
is explained here
https://wiki.nci.nih.gov/display/TCGA/Protein+Array+Data+Format+Specification?src=search.
Converting RTCGA.RPPA to Bioconductor datasets' format is explained here convertTCGA.
Usage
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ACC.RPPA
BLCA.RPPA
BRCA.RPPA
CESC.RPPA
CHOL.RPPA
COAD.RPPA
COADREAD.RPPA
DLBC.RPPA
ESCA.RPPA
GBM.RPPA
GBMLGG.RPPA
HNSC.RPPA
KICH.RPPA
KIPAN.RPPA
KIRC.RPPA
KIRP.RPPA
LGG.RPPA
LIHC.RPPA
LUAD.RPPA
LUSC.RPPA
MESO.RPPA
OV.RPPA
PAAD.RPPA
PCPG.RPPA
PRAD.RPPA
READ.RPPA
SARC.RPPA
SKCM.RPPA
STAD.RPPA
STES.RPPA
TGCT.RPPA
THCA.RPPA
THYM.RPPA
UCEC.RPPA
UCS.RPPA
UVM.RPPA
Value
Data frames with RPPA data.
Source
http://gdac.broadinstitute.org/
Examples
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## Not run:
browseVignettes("RTCGA")
browseVignettes("RTCGA.RPPA")
## End(Not run)
RTCGA/RTCGA.rppa documentation built on May 8, 2019, 8:01 a.m.
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Value Source Examples
Description
Package provides RPPA datasets from The Cancer Genome Atlas Project for
all available cohorts types from http://gdac.broadinstitute.org/.
Data were downloaded using RTCGA-package and contain snapshots
for the date: 2015-11-01. The process is described here:
http://rtcga.github.io/RTCGA/.
Use cases, examples and information about datasets in RTCGA.data
family can be found here: browseVignettes("RTCGA"). RPPA data format
is explained here
https://wiki.nci.nih.gov/display/TCGA/Protein+Array+Data+Format+Specification?src=search.
Converting RTCGA.RPPA to Bioconductor datasets' format is explained here convertTCGA.
Usage
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 | ACC.RPPA
BLCA.RPPA
BRCA.RPPA
CESC.RPPA
CHOL.RPPA
COAD.RPPA
COADREAD.RPPA
DLBC.RPPA
ESCA.RPPA
GBM.RPPA
GBMLGG.RPPA
HNSC.RPPA
KICH.RPPA
KIPAN.RPPA
KIRC.RPPA
KIRP.RPPA
LGG.RPPA
LIHC.RPPA
LUAD.RPPA
LUSC.RPPA
MESO.RPPA
OV.RPPA
PAAD.RPPA
PCPG.RPPA
PRAD.RPPA
READ.RPPA
SARC.RPPA
SKCM.RPPA
STAD.RPPA
STES.RPPA
TGCT.RPPA
THCA.RPPA
THYM.RPPA
UCEC.RPPA
UCS.RPPA
UVM.RPPA
|
Value
Data frames with RPPA data.
Source
http://gdac.broadinstitute.org/
Examples
1 2 3 4 5 | ## Not run:
browseVignettes("RTCGA")
browseVignettes("RTCGA.RPPA")
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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