flowSet-accessor: Accessors compatible with those for 'flowSet'

In RGLab/ncdfFlow: ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.

Accessors compatible with those for flowSet

Description

Accessors compatible with those for flowSet

Usage

## S4 method for signature 'ncdfFlowList,filter'
filter(
  x,
  filter,
  method = "missing",
  sides = "missing",
  circular = "missing",
  init = "missing"
)

## S4 method for signature 'ncdfFlowList,filterList'
filter(
  x,
  filter,
  method = "missing",
  sides = "missing",
  circular = "missing",
  init = "missing"
)

## S4 method for signature 'ncdfFlowList,list'
filter(
  x,
  filter,
  method = "missing",
  sides = "missing",
  circular = "missing",
  init = "missing"
)

## S4 method for signature 'ncdfFlowList'
length(x)

## S4 method for signature 'ncdfFlowList'
sampleNames(object)

## S4 method for signature 'ncdfFlowList'
phenoData(object)

## S4 method for signature 'ncdfFlowList'
pData(object)

## S4 replacement method for signature 'ncdfFlowList,data.frame'
pData(object) <- value

## S4 method for signature 'ncdfFlowList'
colnames(x)

## S4 replacement method for signature 'ncdfFlowList'
colnames(x) <- value

## S4 method for signature 'ncdfFlowList'
markernames(object)

## S4 replacement method for signature 'ncdfFlowList'
markernames(object) <- value

## S4 method for signature 'ncdfFlowSet,ANY'
compensate(x, spillover)

## S4 method for signature 'flowSet,data.frame'
compensate(x, spillover)

## S4 method for signature 'ncdfFlowSet,list'
compensate(x, spillover)

## S4 method for signature 'ncdfFlowSet'
transform(`_data`, translist, ...)

## S4 replacement method for signature 'ncdfFlowSet,ANY'
sampleNames(object) <- value

## S4 replacement method for signature 'ncdfFlowSet'
colnames(x) <- value

## S4 method for signature 'ncdfFlowSet,list'
keyword(object, keyword)

## S4 replacement method for signature 'ncdfFlowSet,list'
keyword(object) <- value

Arguments

x	ncdfFlowSet
filter	filter to be applied
method	missing not used
sides	missing not used
circular	missing not used
init	missing not used
object	ncdfFlowList
value	character vector
spillover	spillover matrix
_data	ncdfFlowSet
translist	a 'transformList' object or a list of 'transformList' objects
...	other arguments
keyword	list

RGLab/ncdfFlow documentation built on July 5, 2022, 10:20 a.m.