fortify_fs: Fortify a model into flowSet object

In RGLab/ggcyto: Visualize Cytometry data with ggplot

Fortify a model into flowSet object

Description

The method provides a universe interface to convert a generic R object into a flowSet useful for ggcyto

Usage

fortify_fs(model, data, ...)

## S3 method for class 'flowSet'
fortify_fs(model, data, ...)

## Default S3 method:
fortify_fs(model, data, ...)

## S3 method for class 'flowFrame'
fortify_fs(model, data, ...)

## S3 method for class 'cytoframe'
fortify_fs(model, data, ...)

## S3 method for class 'GatingSetList'
fortify_fs(model, data, ...)

## S3 method for class 'GatingSet'
fortify_fs(model, data, ...)

Arguments

model	flow object(flowFrame or GatingSet) to be converted to flowSet. when it is a GatingSet, it must contain the subset information stored as 'subset' attribute.
data	original dataset, if needed
...	other arguments passed to methods

Value

a flowSet/ncdfFlowSet object

Examples

data(GvHD)
fr <- GvHD[[1]]
fortify_fs(fr)

dataDir <- system.file("extdata",package="flowWorkspaceData")
gs <- load_gs(list.files(dataDir, pattern = "gs_manual",full = TRUE))
attr(gs, "subset") <- "CD4"
fortify_fs(gs)

RGLab/ggcyto documentation built on March 3, 2024, 6:23 p.m.