markernames: Get/set the column(channel) or marker names

In RGLab/flowWorkspace: Infrastructure for representing and interacting with gated and ungated cytometry data sets.

Get/set the column(channel) or marker names

Description

It simply calls the methods for the underlying flow data (flowSet/ncdfFlowSet/ncdfFlowList).

Usage

## S4 method for signature 'GatingHierarchy'
markernames(object)

## S4 replacement method for signature 'GatingHierarchy'
markernames(object) <- value

## S4 method for signature 'GatingHierarchy'
colnames(x, do.NULL = "missing", prefix = "missing")

## S4 replacement method for signature 'GatingHierarchy'
colnames(x) <- value

Arguments

value	named character vector for markernames<-, regular character vector for colnames<-.
x, object	GatingHierarchy/GatingSet/GatingSetList
do.NULL, prefix	not used.

Examples

## Not run: 

markers.new <- c("CD4", "CD8")
chnls <- c("<B710-A>", "<R780-A>")
names(markers.new) <- chnls
markernames(gs) <- markers.new

chnls <- colnames(gs)
chnls.new <- chnls
chnls.new[c(1,4)] <- c("fsc", "ssc")
colnames(gs) <-  chnls.new

## End(Not run)

RGLab/flowWorkspace documentation built on March 17, 2024, 2:24 p.m.