addCustomInfo: add customInfo nodes to each gate node and add...
In RGLab/CytoML: A GatingML Interface for Cross Platform Cytometry Data Sharing
View source: R/GatingSet2cytobank.R
addCustomInfo R Documentation
add customInfo nodes to each gate node and add BooleanAndGates
Description
add customInfo nodes to each gate node and add BooleanAndGates
Usage
addCustomInfo(root, gs, flowEnv, cytobank.default.scale = TRUE, showHidden)
Arguments
root
the root node of the XML
gs
a GatingSet object
flowEnv
the environment that stores the information parsed by 'read.GatingML'.
cytobank.default.scale
logical flag indicating whether to use the default Cytobank asinhtGml2 settings.
Currently it should be set to TRUE in order for gates to be displayed properly in Cytobank
because cytobank currently does not parse the global scale settings from GatingML.
showHidden
whether to include the hidden population nodes in the output
Value
XML root node
RGLab/CytoML documentation built on Feb. 1, 2024, 12:34 a.m.
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View source: R/GatingSet2cytobank.R
| addCustomInfo | R Documentation |
add customInfo nodes to each gate node and add BooleanAndGates
Description
add customInfo nodes to each gate node and add BooleanAndGates
Usage
addCustomInfo(root, gs, flowEnv, cytobank.default.scale = TRUE, showHidden)
Arguments
root |
the root node of the XML |
gs |
a GatingSet object |
flowEnv |
the environment that stores the information parsed by 'read.GatingML'. |
cytobank.default.scale |
logical flag indicating whether to use the default Cytobank asinhtGml2 settings. Currently it should be set to TRUE in order for gates to be displayed properly in Cytobank because cytobank currently does not parse the global scale settings from GatingML. |
showHidden |
whether to include the hidden population nodes in the output |
Value
XML root node
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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