Przemol/seqplots
An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and heatmaps

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Przemol/seqplots: An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and heatmaps
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An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and heatmaps

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS
R/MotifSetup-class.R R/PlotSetArray-class.R R/PlotSetList-class.R R/PlotSetPair-class.R R/add_local_files.R R/deployServerInstance.R R/generic_methods.R R/getPlotSetArray.R R/helper_functions.R R/int_getSF.R R/int_ggHeatmapPlotWrapper.R R/int_heatmapPlotWrapper.R R/int_imPlot2.R R/int_plotMext.R R/plotAverage.R R/plotHeatmap.R R/run.R R/seqplots-package.R R/zzz.R README.md
SeqPlots_Rpackage.Rproj
appveyor.yml
codecov.yml
index.html
inst/CITATION
inst/extdata/GSM1208360_chrI_100Kb_q5_sample.bw
inst/extdata/GSM1208361_chrI_100Kb_PeakCalls.bed
inst/extdata/Transcripts_ce10_chrI_100Kb.bed
inst/extdata/precalc_plotset.Rdata
inst/extdocs/Logo.R inst/extdocs/pkgdown.R inst/extdocs/source_control.md inst/seqplots/functions/LOCAL/mceval.R inst/seqplots/functions/LOCAL/server_plotHeatmap.R inst/seqplots/functions/LOCAL/server_plotLineplot.R inst/seqplots/functions/doFileOperations.R inst/seqplots/functions/mcCalcStart_calculations.R inst/seqplots/functions/mcDoParallel_plotting.R inst/seqplots/functions/renderHTMLgrid.R inst/seqplots/global.R inst/seqplots/server.R inst/seqplots/server_config.R inst/seqplots/ui.R
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inst/seqplots/ui/FileManagementModal.R
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inst/seqplots/www/help/AdvOup.md inst/seqplots/www/help/Batch.md inst/seqplots/www/help/Errors.md inst/seqplots/www/help/Files.md inst/seqplots/www/help/GUIplottingControls.md inst/seqplots/www/help/Genomes.md inst/seqplots/www/help/Heatmaps.md inst/seqplots/www/help/Home.md inst/seqplots/www/help/Home2.md inst/seqplots/www/help/Install_Docker.md inst/seqplots/www/help/Install_OSX.md inst/seqplots/www/help/Install_R.md inst/seqplots/www/help/Install_apps.md inst/seqplots/www/help/Install_server.md inst/seqplots/www/help/Legacy.md inst/seqplots/www/help/Outputs.md inst/seqplots/www/help/PlotSets.md inst/seqplots/www/help/Plotting.md inst/seqplots/www/help/QuickStart.md inst/seqplots/www/help/References.md inst/seqplots/www/help/SaveAndLoad.md inst/seqplots/www/help/Terms.md inst/seqplots/www/help/Versions.md inst/seqplots/www/help/help.Rmd
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man/MotifSetup-class.Rd man/PlotSetArray-class.Rd man/PlotSetList-class.Rd man/PlotSetPair-class.Rd man/add_local_file.Rd man/deployServerInstance.Rd man/getPlotSetArray.Rd man/getREF.Rd man/ggHeatmapPlotWrapper.Rd man/heatmapPlotWrapper.Rd man/imPlot2.Rd man/import.narrowPeak.Rd man/num2bp.Rd man/num2sci.Rd man/plot.Rd man/plotAverage.Rd man/plotHeatmap.Rd man/plotMext.Rd man/run.Rd man/seqplots-generic.Rd man/seqplots.Rd tests/test-all.R tests/testthat/test1.R vignettes/QuickStart.Rmd vignettes/SeqPlotsGUI.Rmd
Przemol/seqplots documentation built on May 14, 2022, 6:47 a.m.

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