package: Full genome sequences for Homo sapiens (UCSC version hg19)

In Przemol/BSgenome.Hsapiens.UCSC.hg19: Full genome sequences for Homo sapiens (UCSC version hg19)

Description

Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg19, Feb. 2009) and stored in Biostrings objects.

Note

This BSgenome data package was made from the following source data files:

chromFa.zip, upstream1000.zip, upstream2000.zip, upstream5000.zip
from http://hgdownload.cse.ucsc.edu/goldenPath/hg19/bigZips/

  

See ?BSgenomeForge and the BSgenomeForge vignette (vignette("BSgenomeForge")) in the BSgenome software package for how to make a BSgenome data package.

Author(s)

The Bioconductor Dev Team

See Also

• BSgenome objects and the available.genomes function in the BSgenome software package.

• DNAString objects in the Biostrings package.

• The BSgenomeForge vignette (vignette("BSgenomeForge")) in the BSgenome software package for how to make a BSgenome data package.

Examples

BSgenome.Hsapiens.UCSC.hg19
genome <- BSgenome.Hsapiens.UCSC.hg19
seqlengths(genome)
genome$chr1  # same as genome[["chr1"]]

## See the GenomeSearching vignette in the BSgenome software
## package for some examples of genome-wide motif searching using
## Biostrings and the BSgenome data packages:
if (interactive())
    vignette("GenomeSearching", package="BSgenome")

Przemol/BSgenome.Hsapiens.UCSC.hg19 documentation built on May 8, 2019, 3:46 a.m.