plotProtein: Display protein domains

In PoisonAlien/maftools: Summarize, Analyze and Visualize MAF Files

Display protein domains

Description

Display protein domains

Usage

plotProtein(
  gene,
  refSeqID = NULL,
  proteinID = NULL,
  domainAlpha = 0.9,
  showLegend = FALSE,
  bgBorderCol = "black",
  axisTextSize = c(1, 1),
  roundedRect = TRUE,
  domainBorderCol = "black",
  showDomainLabel = TRUE,
  domainLabelSize = 0.8,
  titleSize = c(1.2, 1),
  legendTxtSize = 1,
  legendNcol = 1
)

Arguments

gene	HGNC symbol for which protein structure to be drawn.
refSeqID	RefSeq transcript identifier for gene if known.
proteinID	RefSeq protein identifier for gene if known.
domainAlpha	Default 1
showLegend	Default TRUE
bgBorderCol	Default "black". Set to NA to remove.
axisTextSize	text size x and y tick labels. Default c(1,1).
roundedRect	Default TRUE. If 'TRUE' domains are drawn with rounded corners. Requires berryFunctions
domainBorderCol	Default "black". Set to NA to remove.
showDomainLabel	Default TRUE
domainLabelSize	text size for domain labels. Default 0.8
titleSize	font size for title and subtitle. Default c(1.2, 1)
legendTxtSize	Text size for legend. Default 0.8
legendNcol	Default 1

Examples

par(mfrow = c(2, 1))
plotProtein(gene = "KIT")
plotProtein(gene = "DNMT3A")

PoisonAlien/maftools documentation built on Nov. 5, 2024, 4:12 p.m.