View source: R/plot_mostdepth.R
plotMosdepth_t | R Documentation |
Plot results from mosdepth output
plotMosdepth_t(
bed = NULL,
col = c("#95a5a6", "#7f8c8d"),
sample_name = NULL,
segment = FALSE
)
bed |
mosdepth output |
col |
Colors. Default c("#95a5a6", "#7f8c8d") |
sample_name |
sample name. Default parses from 'bed' |
segment |
Performs CBS segmentation. Default FALSE |
Invisibly returns DNAcopy
object if 'segment' is 'TRUE'
Pedersen BS, Quinlan AR. Mosdepth: quick coverage calculation for genomes and exomes. Bioinformatics. 2018;34(5):867-868. doi:10.1093/bioinformatics/btx699
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