plotMosdepth_t: Plot results from mosdepth output

View source: R/plot_mostdepth.R

plotMosdepth_tR Documentation

Plot results from mosdepth output

Description

Plot results from mosdepth output

Usage

plotMosdepth_t(
  bed = NULL,
  col = c("#95a5a6", "#7f8c8d"),
  sample_name = NULL,
  segment = FALSE
)

Arguments

bed

mosdepth output

col

Colors. Default c("#95a5a6", "#7f8c8d")

sample_name

sample name. Default parses from 'bed'

segment

Performs CBS segmentation. Default FALSE

Value

Invisibly returns DNAcopy object if 'segment' is 'TRUE'

References

Pedersen BS, Quinlan AR. Mosdepth: quick coverage calculation for genomes and exomes. Bioinformatics. 2018;34(5):867-868. doi:10.1093/bioinformatics/btx699


PoisonAlien/maftools documentation built on Nov. 5, 2024, 4:12 p.m.