plotEnrichmentResults: Plots results from clinicalEnrichment analysis

In PoisonAlien/maftools: Summarize, Analyze and Visualize MAF Files

Plots results from clinicalEnrichment analysis

Description

Plots results from clinicalEnrichment analysis

Usage

plotEnrichmentResults(
  enrich_res,
  pVal = 0.05,
  ORthr = 1,
  featureLvls = NULL,
  cols = NULL,
  annoFontSize = 0.8,
  geneFontSize = 0.8,
  legendFontSize = 0.8,
  showTitle = TRUE,
  ylims = c(-1, 1)
)

Arguments

enrich_res	results from clinicalEnrichment or signatureEnrichment
pVal	Default 0.05
ORthr	Default 1. Odds ratio threshold. >1 indicates positive enrichment in the group of interest.
featureLvls	Plot results from the selected levels. Default NULL, plots all.
cols	named vector of colors for factor in a clinical feature. Default NULL
annoFontSize	cex for annotation font size. Default 0.8
geneFontSize	cex for gene font size. Default 0.8
legendFontSize	cex for legend font size. Default 0.8
showTitle	Default TRUE
ylims	Default c(-1, 1)

Value

returns nothing.

See Also

clinicalEnrichment signatureEnrichment

PoisonAlien/maftools documentation built on Nov. 5, 2024, 4:12 p.m.