dot-checkCoolErrors: Error checking function for .(m)cool files

In PhanstielLab/BentoBox: Coordinate-Based Genomic Visualization Package for R

Error checking function for .(m)cool files

Description

Error checking function for .(m)cool files

Usage

.checkCoolErrors(
  file,
  chrom,
  chromstart,
  chromend,
  zrange,
  altchrom,
  altchromstart,
  altchromend,
  norm,
  resolution
)

Arguments

file	Path to .(m)cool file
chrom	User-inputted chromosome
chromstart	User-inputted chromstart, can still be NULL at this point.
chromend	User-inputted chromend, can still be NULL at this point.
zrange	User-inputted zrange.
altchrom	User-inputted alt chromosome.
altchromstart	User-inputted alt chromstart.
altchromend	User-inputted alt chromend.
norm	User-inputted normalization.
resolution	Resolution, either user-inputted or determined by 'auto'.

PhanstielLab/BentoBox documentation built on Feb. 27, 2025, midnight