processDifferentialExpressionAnalysisResultByGeneValueObject_tsv: processDifferentialExpressionAnalysisResultByGeneValueObject_tsv

In PavlidisLab/gemma.R: A wrapper for Gemma's Restful API to access curated gene expression data and differential expression analyses

processDifferentialExpressionAnalysisResultByGeneValueObject_tsv

Description

processDifferentialExpressionAnalysisResultByGeneValueObject_tsv

Usage

processDifferentialExpressionAnalysisResultByGeneValueObject_tsv(content)

Value

A data.table containing differential expression results. This table is stripped down some relevant information for speed of execution. Details about the contrasts can be accessesed via get_result_sets function

The fields of the output data.table are:

• result.ID: Result set ID of the differential expression analysis. May represent multiple factors in a single model.

• contrast.ID: Id of the specific contrast factor. Together with the result.ID they uniquely represent a given contrast.

• experiment.ID: Id of the source experiment

• factor.coefficient: Model coefficient calculated for the specific contrast factor

• factor.logfc: Log 2 fold change calculated for the specific contrast factor

• factor.pvalue: p values calculated for the specific contrast factor

PavlidisLab/gemma.R documentation built on Oct. 25, 2024, 10:59 a.m.