dot-scoreByTranscripts: Ranking matching transcripts
In PapenfussLab/svaRetro: Retrotransposed transcript detection from structural variants
.scoreByTranscripts R Documentation
Ranking matching transcripts
Description
Ranking matching transcripts
Usage
.scoreByTranscripts(genes, transcripts.col)
Arguments
genes
TxDb object of genes. hg19 and hg38 are supported in the current version.
transcripts.col
A vector of transcript names.
Details
This is an internal function which returns overlapping transcript names with ranking scores.
The ranking score is the proportion of exon-exon fusions (intronic deletion events) detected for a given transcript.
Value
A dataframe with two columns, tx_name and score.
PapenfussLab/svaRetro documentation built on June 15, 2022, 1:42 a.m.
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| .scoreByTranscripts | R Documentation |
Ranking matching transcripts
Description
Ranking matching transcripts
Usage
.scoreByTranscripts(genes, transcripts.col)
Arguments
genes |
TxDb object of genes. hg19 and hg38 are supported in the current version. |
transcripts.col |
A vector of transcript names. |
Details
This is an internal function which returns overlapping transcript names with ranking scores. The ranking score is the proportion of exon-exon fusions (intronic deletion events) detected for a given transcript.
Value
A dataframe with two columns, tx_name and score.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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