datasets_real: Exemplary FHIR bundles
In POLAR-fhiR/fhircrackr: Handling HL7 FHIR® Resources in R

medication_bundles

R Documentation

Exemplary FHIR bundles

Description

These data examples can be used to explore some of the functions from the fhircrackr package when direct access to a FHIR server is not possible.

All example data sets are fhir_bundle_lists containing fhir_bundle_serialized objects representing FHIR bundles as returned by fhir_search(). They have to be unserialized (once per R session), before you can work with them!

Usage

medication_bundles

patient_bundles

Format

An object of class fhir_bundle_list of length 3.

An object of class fhir_bundle_list of length 2.

Details

medication_bundles contains 3 bundles with MedicationStatement resources representing Medications with Snomed CT code 429374003 and the respective Patient resources that are linked to these MedicationStatements.

patient_bundles contains 2 bundles with Patient resources.

Source

The data sets are generated by the following code:

medication_bundles (Downloaded 10-05-21)

search_request  <- fhir_url(url = "https://hapi.fhir.org/baseR4",
							resource = "MedicationStatement",
							parameters = c("code" = "http://snomed.info/ct|429374003",
										   "_include" = "MedicationStatement:subject"))

bundles <- fhir_search(request = search_request, max_bundles = 3)

medication_bundles <- fhir_serialize(bundles = bundles)

patient_bundles (Downloaded 10-05-21)

bundles <- fhir_search(request="https://hapi.fhir.org/baseR4/Patient",
                       max_bundles=2,
                       verbose = 0)

patient_bundles <- fhir_serialize(bundles = bundles)

Examples

#unserialize xml objects before doing anything else with them!
fhir_unserialize(bundles = medication_bundles)

#unserialize xml objects before doing anything else with them!
fhir_unserialize(bundles = patient_bundles)

POLAR-fhiR/fhircrackr documentation built on Dec. 24, 2024, 3:06 a.m.