txomeai_connect: Build a connection object to a RNA-seq analysis report

In OceanGenomics/txomeai: API access to Ocean Genomics txome.ai RNA-seq Analysis

Description

Build a connection object to a RNA-seq analysis report

Usage

txomeai_connect(url)

Arguments

url	The report URL

Value

A constructed list connection object.

ls	A summary table of all the available data.
sample_meta	A table with sample meta data.
comparative_meta	A table with comparative analysis meta data.
url	The URL used to access the API data.
CAS	The ID of the analysis.
instance	The ID of the report.
dir	The path to the query cache location.
assets	(Experimental) A table of svg plots in the report.

References

https://txomeai.oceangenomics.com/

Examples

dontrun
# Basic connection example
domain <- "https://txomeai.oceangenomics.com"
path <- paste0("api/pipeline-output/c444dfda-de51-4053-8cb7-881dd1b2734d/",
   "2021-10-25T185916/report/index.html")
report <- txomeai_connect(paste(domain, path, sep="/"))
# View all the available analysis tables
unique(report$ls$name)
# View sample meta data table
report$sample_meta
# View comparative analysis meta data table
report$comparative_meta

OceanGenomics/txomeai documentation built on Feb. 19, 2022, 1:46 p.m.