R/gateHandlers.R

In NKInstinct/gater: Interactive Cytometry Gating in R

#' Gate Handlers for gs_gate_interactive
#'
#' These two functions convert the brushes and clicks on the plot generated in
#' gs_gate_interactive into usable dimensions for flowCore's filter definition
#' functions
#'
#' @param brush a reactive from the shiny app referring to brushes on the plot.
#' @param click a reactive from the shiny app referring to clicks on the plot.
#' @param gateType an input from the shiny app showing the type of gate the user
#'   wishes to draw.
#'
#' @return A set of gate coordinates formatted according to the gate type chosen
#'   by the user.
#'
#' @noRd
#'
coordBrush <- function(brush, gateType, useBiex, transX, transY){
    if(useBiex){
        brush$xmin <- transX(brush$xmin)
        brush$xmax <- transX(brush$xmax)
        brush$ymin <- transY(brush$ymin)
        brush$ymax <- transY(brush$ymax)
    }
  
    if(gateType == "rectangleGate"){
        res <- list(
            "X" = c(brush$xmin, brush$xmax), "Y" = c(brush$ymin, brush$ymax))
    } else if(gateType == "spanGate"){
        res <- list("X" = c(brush$xmin, brush$xmax))
    }
    return(res)
}

coordClick <- function(click, gateType, useBiex, transX, transY){
    if(useBiex){
        click$x <- transX(click$x)
        click$y <- transY(click$y)
    }
    if(gateType == "polygonGate"){
        res <- data.frame("x" = click$x, "y" = click$y)
    } else if(gateType == "quadGate"){
        res <- list("X" = click$x, "Y" = click$y)
    }
    return(res)
}

gateHandler <- function(gateType, brush, click, biex, tX, tY, append){
    switch(gateType,
            rectangleGate = ,
            spanGate = coordBrush(brush, gateType, biex, tX, tY),
            quadGate = coordClick(click, gateType, biex, tX, tY),
            polygonGate = dplyr::bind_rows(
                append, coordClick(click, gateType, biex, tX, tY)),
            stop("Invalid gate type"))
}