runAnnotator: Run annotator3D as a Shiny app
In NElnour/annotator3D: Classification of genome motifs or features to TADs
Description
Usage
Details
Examples
View source: R/runAnnotationApp.R
Description
runAnnotationApp runs annotator3D as a Shiny app.
The user needs to upload FIMO matched motif TSV file and a TSV file
containing predicted chromatin loops. The user can then customize parameters
of visualization such as lower bound for loop membership score, and Gviz
plotting options.
Usage
1
Details
Example TSV files are included in extdata to run annotator3D.
Examples
1
2
3
4
## Not run:
runAnnotator()
## End(Not run)
NElnour/annotator3D documentation built on Dec. 8, 2019, 9:22 a.m.
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Description Usage Details Examples
View source: R/runAnnotationApp.R
Description
runAnnotationApp runs annotator3D as a Shiny app. The user needs to upload FIMO matched motif TSV file and a TSV file containing predicted chromatin loops. The user can then customize parameters of visualization such as lower bound for loop membership score, and Gviz plotting options.
Usage
1 |
Details
Example TSV files are included in extdata to run annotator3D.
Examples
1 2 3 4 | ## Not run:
runAnnotator()
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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